LocusZoom - Plot with Your Data

This service is not actively maintained. Consider using our new my.locuszoom.org for the latest features, including support for build GRCh38.

Depending on the size of your data, runs can require 30-60 seconds to generate a plot

Provide
Details for
Your Data

Path to Your File	File will be sent to server and used for plotting (Maximum 2GB) [Help]
P-Value Column Name	Default is P.value	Set for PLINK data or WikiGWA data
Marker Column Name	Default is MarkerName
Column Delimiter	Default is tab

Specify
Region
to Display

Required:
Fill in
Only ONE
of These
Three

SNP

	+/-	Kb
SNP Reference Name		Flanking Size

Gene

	+/-	Kb
Gene Reference Name		Flanking Size	Optional Index SNP Default=lowest p-value

Region

Chr:	Mb	through	Mb
	Starting Chr Position		Ending Chr Position	Optional Index SNP Default=lowest p-value

Custom
Annotation

Optional:
This overrides
Show Annotation
below

Column Name	Name of annotation column
Category Order	Order of annotation categories

Title
On Plot

Default is name of plot data

Genome Build/
LD Population

Please make sure the genome build matches your selected data type!

Legend
Location

Show
RUG

HapMap
Use SNPs in Data		Label for RUG of your SNPs

Maximum Rows
of Gene
Names

Point Size
Proportional
to Sample Size

Specify NOWEIGHT as the column name to disable this

Highlight
Region
of Interest

Mb	through	Mb
Leave blank if no highlighting is needed

Theme

Show
Annotation

Built-in annotations disabled (they were far out of date.) You can specify your own annotations using the custom annotation options above.

Y-Axis

	Maximum -log 10 pvalue
	Y-Axis Label

Other
Options

Recombination Rate Overlay
Display Warning for Omitted Genes

This service is not actively maintained. Consider using our new my.locuszoom.org for the latest features, including support for build GRCh38.

Typical runs require 20-50 seconds to generate a plot